PDB-code
| Kinase structure | |
| Kinase: | Ripk3 (RIPK3) |
| Family: | RIPK |
| Group: | TKL |
| Species: | MOUSE |
| PDB: | 6OKO |
| sc-PDB: | |
| KIDFamMap: | Search |
| Release date: | 2019-07-17 |
| PubMed: | 32184955 |
| Chain: | A |
| (Alternate) Model: | B |
| Orthosteric ligand: | 1FN |
 | |
| More entries for 6OKO | |||||
| 6OKO | Alternative model: | A | Chain: | A | |
| 6OKO | Alternative model: | A | Chain: | B | |
| 6OKO | Alternative model: | B | Chain: | B | |
| Structural information | |
| DFG conformation: | out |
| αC-helix conformation: | in |
| G-rich loop angle (distance): | 57° (17.9Å) |
| G-rich loop rotation: | 36.9° |
| Quality Score: | 8.4 |
| Resolution: | 2.1 Å |
| Missing Residues: | 3 |
| Missing Atoms: | 4 |
| Ligand binding mode | ||||
| Pockets | Subpockets | Waters | ||
| front gate back | BP-I-A BP-I-B BP-II-out BP-III | Cluster I1 I2 I7 | Ligand No No No | Protein Yes No Yes |
| Pocket alignment | |
| Uniprot sequence: | EFVGKGGFGVVFRVAVKIVKISWEVKAMVNLRENVLLLLGVALVTRFMENGSLAGLLQPHSLNPPLLHRDLKPSNILLLADFGLS |
| Sequence structure: | EFVGKGGFGVVFRVAVKIVKISWEVKAMVNLRENVLLLLGVALVTRFMENGSLAGLLQPHSLDPPLLHRDLKPSNILLLADF___ |
| Ligand affinity | |
| ChEMBL ID: | CHEMBL509101 |
| Bioaffinities: | 7 records for 5 kinases |
| Species | Kinase (ChEMBL naming) | Median | Min | Max | Type | Records |
|---|---|---|---|---|---|---|
| Homo sapiens | Hepatocyte growth factor receptor | 8.7 | 8.7 | 8.7 | pIC50 | 3 |
| Homo sapiens | Stem cell growth factor receptor | 6.2 | 6.2 | 6.2 | pIC50 | 1 |
| Homo sapiens | Tyrosine-protein kinase LCK | 6.5 | 6.5 | 6.5 | pIC50 | 1 |
| Homo sapiens | Tyrosine-protein kinase receptor FLT3 | 8.4 | 8.4 | 8.4 | pIC50 | 1 |
| Homo sapiens | Vascular endothelial growth factor receptor 2 | 8.4 | 8.4 | 8.4 | pIC50 | 1 |
Kinase-ligand interaction pattern
• Hydrophobic • Aromatic face-to-face • Aromatic face-to-edge • H-bond donor • H-bond acceptor • Ionic positive • Ionic negative
| I | g.l | II | III | αC | |||||||||||||||
| 1 E 26 | 2 F 27 | 3 V 28 | 4 G 29 | 5 K 30 | 6 G 31 | 7 G 32 | 8 F 33 | 9 G 34 | 10 V 35 | 11 V 36 | 12 F 37 | 13 R 38 | 14 V 48 | 15 A 49 | 16 V 50 | 17 K 51 | 18 I 52 | 19 V 53 | 20 K 57 |
| • | • | • | •• | ||||||||||||||||
| αC | b.l | IV | |||||||||||||||||
| 21 I 58 | 22 S 59 | 23 W 60 | 24 E 61 | 25 V 62 | 26 K 63 | 27 A 64 | 28 M 65 | 29 V 66 | 30 N 67 | 31 L 68 | 32 R 69 | 33 E 71 | 34 N 72 | 35 V 73 | 36 L 74 | 37 L 75 | 38 L 76 | 39 L 77 | 40 G 78 |
| • | • | • | • | • | • | ||||||||||||||
| IV | V | GK | hinge | linker | αD | αE | |||||||||||||
| 41 V 79 | 42 A 92 | 43 L 93 | 44 V 94 | 45 T 95 | 46 R 96 | 47 F 97 | 48 M 98 | 49 E 99 | 50 N 100 | 51 G 101 | 52 S 102 | 53 L 103 | 54 A 104 | 55 G 105 | 56 L 106 | 57 L 107 | 58 Q 108 | 59 P 109 | 60 H 133 |
| • | • | •• | ••• | ||||||||||||||||
| αE | VI | c.l | VII | VIII | x | ||||||||||||||
| 61 S 134 | 62 L 135 | 63 D 136 | 64 P 137 | 65 P 138 | 66 L 139 | 67 L 140 | 68 H 141 | 69 R 142 | 70 D 143 | 71 L 144 | 72 K 145 | 73 P 146 | 74 S 147 | 75 N 148 | 76 I 149 | 77 L 150 | 78 L 151 | 79 L 159 | 80 A 160 |
| • | •• | • | • | • | |||||||||||||||
| DFG | a.l | ||||||||||||||||||
| 81 D 161 | 82 F 162 | 83 _ _ | 84 _ _ | 85 _ _ | |||||||||||||||
| •• | •• | ||||||||||||||||||
Interaction pattern search
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