PDB-code
| Kinase structure | |
| Kinase: | CDK12 (CRK7) |
| Family: | CDK |
| Group: | CMGC |
| Species: | HUMAN |
| PDB: | 8BUM |
| sc-PDB: | |
| KIDFamMap: | Search |
| Release date: | 2023-09-20 |
| PubMed: | 37679459 |
| Chain: | B |
| Orthosteric ligand: | T6X |
 | |
| Structural information | |
| DFG conformation: | in |
| αC-helix conformation: | in |
| G-rich loop angle (distance): | 51.4° (15.8Å) |
| G-rich loop rotation: | 49.1° |
| Quality Score: | 8 |
| Resolution: | 3.36 Å |
| Missing Residues: | 0 |
| Missing Atoms: | 0 |
| Ligand binding mode | ||||
| Pockets | Subpockets | |||
| front | FP-I BP-I-B | |||
| Pocket alignment | |
| Uniprot sequence: | GIIGEGTYGQVYKVALKKVTAIREIKILRQLIRSVVNMKEIYLVFEYMD-HDLMGLLESYCHKKNFLHRDIKCSNILLLADFGLA |
| Sequence structure: | GIIGEGTYGQVYKVALKKVTAIREIKILRQLIRSVVNMKEIYLVFEYMD_HDLMGLLESYCHKKNFLHRDIKCSNILLLADFGLA |
| Ligand affinity | |
| Ligand not found in ChEMBL. | |
Kinase-ligand interaction pattern
• Hydrophobic • Aromatic face-to-face • Aromatic face-to-edge • H-bond donor • H-bond acceptor • Ionic positive • Ionic negative
| I | g.l | II | III | αC | |||||||||||||||
| 1 G 731 | 2 I 732 | 3 I 733 | 4 G 734 | 5 E 735 | 6 G 736 | 7 T 737 | 8 Y 738 | 9 G 739 | 10 Q 740 | 11 V 741 | 12 Y 742 | 13 K 743 | 14 V 753 | 15 A 754 | 16 L 755 | 17 K 756 | 18 K 757 | 19 V 758 | 20 T 770 |
| • | • | • | • | • | |||||||||||||||
| αC | b.l | IV | |||||||||||||||||
| 21 A 771 | 22 I 772 | 23 R 773 | 24 E 774 | 25 I 775 | 26 K 776 | 27 I 777 | 28 L 778 | 29 R 779 | 30 Q 780 | 31 L 781 | 32 I 782 | 33 R 784 | 34 S 785 | 35 V 786 | 36 V 787 | 37 N 788 | 38 M 789 | 39 K 790 | 40 E 791 |
| • | |||||||||||||||||||
| IV | V | GK | hinge | linker | αD | αE | |||||||||||||
| 41 I 792 | 42 Y 810 | 43 L 811 | 44 V 812 | 45 F 813 | 46 E 814 | 47 Y 815 | 48 M 816 | 49 D 817 | 50 _ _ | 51 H 818 | 52 D 819 | 53 L 820 | 54 M 821 | 55 G 822 | 56 L 823 | 57 L 824 | 58 E 825 | 59 S 826 | 60 Y 849 |
| • | • | • | ••• | • | • | • | |||||||||||||
| αE | VI | c.l | VII | VIII | x | ||||||||||||||
| 61 C 850 | 62 H 851 | 63 K 852 | 64 K 853 | 65 N 854 | 66 F 855 | 67 L 856 | 68 H 857 | 69 R 858 | 70 D 859 | 71 I 860 | 72 K 861 | 73 C 862 | 74 S 863 | 75 N 864 | 76 I 865 | 77 L 866 | 78 L 867 | 79 L 875 | 80 A 876 |
| • | • | ||||||||||||||||||
| DFG | a.l | ||||||||||||||||||
| 81 D 877 | 82 F 878 | 83 G 879 | 84 L 880 | 85 A 881 | |||||||||||||||
Interaction pattern search
Search KLIFS for kinase-ligand complexes with similar interaction patterns:
