PDB-code
| Kinase structure | |
| Kinase: | MARK2 |
| Family: | CAMKL |
| Group: | CAMK |
| Species: | HUMAN |
| IUPHAR/BPS ID: | 2098 |
| PDB: | 5EAK |
| sc-PDB: | |
| KIDFamMap: | Search |
| Release date: | 2016-02-17 |
| PubMed: | 27491711 |
| Chain: | B |
| Orthosteric ligand: | 24R |
 | |
| More entries for 5EAK | |||
| 5EAK | Chain: | A | |
| Structural information | |
| DFG conformation: | in |
| αC-helix conformation: | in |
| G-rich loop angle (distance): | 55.2° (16.7Å) |
| G-rich loop rotation: | 40° |
| Quality Score: | 7.6 |
| Resolution: | 2.8 Å |
| Missing Residues: | 1 |
| Missing Atoms: | 0 |
| Ligand binding mode | ||||
| Pockets | Subpockets | |||
| front | FP-II | |||
| Pocket alignment | |
| Uniprot sequence: | KTIGKGNFAKVKLVAVKIIKLFREVRIMKVLNPNIVKLFEVYLVMEYASGGEVFDYLVAYCHQKFIVHRDLKAENLLLIADFGFS |
| Sequence structure: | KTIGKGNFAKVKLVAVKIIKLFREVRIMKVLNPNIVKLFEVYLVMEYASGGEVFDYLVAYCHQKFIVHRDLKAENLLLIADFGF_ |
| Ligand affinity | |
| Ligand not found in ChEMBL. | |
Kinase-ligand interaction pattern
• Hydrophobic • Aromatic face-to-face • Aromatic face-to-edge • H-bond donor • H-bond acceptor • Ionic positive • Ionic negative
| I | g.l | II | III | αC | |||||||||||||||
| 1 K 57 | 2 T 58 | 3 I 59 | 4 G 60 | 5 K 61 | 6 G 62 | 7 N 63 | 8 F 64 | 9 A 65 | 10 K 66 | 11 V 67 | 12 K 68 | 13 L 69 | 14 V 79 | 15 A 80 | 16 V 81 | 17 K 82 | 18 I 83 | 19 I 84 | 20 K 96 |
| • | • | • | • | • | •• | ||||||||||||||
| αC | b.l | IV | |||||||||||||||||
| 21 L 97 | 22 F 98 | 23 R 99 | 24 E 100 | 25 V 101 | 26 R 102 | 27 I 103 | 28 M 104 | 29 K 105 | 30 V 106 | 31 L 107 | 32 N 108 | 33 P 110 | 34 N 111 | 35 I 112 | 36 V 113 | 37 K 114 | 38 L 115 | 39 F 116 | 40 E 117 |
| IV | V | GK | hinge | linker | αD | αE | |||||||||||||
| 41 V 118 | 42 Y 126 | 43 L 127 | 44 V 128 | 45 M 129 | 46 E 130 | 47 Y 131 | 48 A 132 | 49 S 133 | 50 G 134 | 51 G 135 | 52 E 136 | 53 V 137 | 54 F 138 | 55 D 139 | 56 Y 140 | 57 L 141 | 58 V 142 | 59 A 143 | 60 Y 165 |
| • | •• | •• | • | • | |||||||||||||||
| αE | VI | c.l | VII | VIII | x | ||||||||||||||
| 61 C 166 | 62 H 167 | 63 Q 168 | 64 K 169 | 65 F 170 | 66 I 171 | 67 V 172 | 68 H 173 | 69 R 174 | 70 D 175 | 71 L 176 | 72 K 177 | 73 A 178 | 74 E 179 | 75 N 180 | 76 L 181 | 77 L 182 | 78 L 183 | 79 I 191 | 80 A 192 |
| ••• | • | ||||||||||||||||||
| DFG | a.l | ||||||||||||||||||
| 81 D 193 | 82 F 194 | 83 G 195 | 84 F 196 | 85 _ _ | |||||||||||||||
| ••• | |||||||||||||||||||
Interaction pattern search
Search KLIFS for kinase-ligand complexes with similar interaction patterns:
